Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919673.1_cds_XP_016468864.1_61460
CDS Infomation

[gene=LOC107791339] [db_xref=GeneID:107791339] [protein=J domain-containing protein required for chloroplast accumulation response 1-like] [protein_id=XP_016468864.1] [location=complement(join(31313..31351,31739..31915,32160..32237,32320..32385,32698..32765,33114..33225,33371..33876,33958..34682,35473..35894))] [gbkey=CDS]
Sequence

ATGGAGAGAATTTCCCAAAAGGAAAATGTTTTATTCGAATATGGTCCTCAAAGATCATTT
GAGAACTCACCTAGTGACATGGACATGGATTTTAACGATGTTTTCGGGGGTCCCCCCAGA
CGTTTTTCAATCCAAGAAGGGAGAAAGAGGCATAGTTTCAATGACCCAATGGAGTATGAA
GAAGATTCAGCAGGTTCATCGCGCAATTCATATGAAAAGCCAGTTTTTGGGGCAGAAAAT
GCTAATAGAAGGCGAAATCAAGGTGAAGATTTCTATGATGATATATTTAGAGTTGATGAA
TCACCAAGGAGGAGTGATAGGGACCCTTTTGGCTCAAATCCCGGTTCCAGAGTTTTAAGC
CCCGTTCGTCCTTTGTCACCAAAATTTGAAGCTTTTGCTACTTCACTCCCTGCTCAATTC
AGTCTTCCTGCCAAGTTGACGAAAGCAACAGATCTTCCCCTATTTGCTTCGGGAAGTCAT
AGTCCACAAAAGAAGCGAGAGAAAGAGATGAAAAATGATGCTCCCACATTTTATCGACAA
AGTCCATTATCCCGTGAAGGTACTAGTATTGGTGATGAATTAAGATACATGTCTGAATCT
GATGAGCAAGACATAGGAGGCAATCTGAAGAAGAACGGAGAAAGCAAGGAAGCTTCCAGT
ACTGAATATCAATTTCATTTCTCCATATACAAGTGGGCAGGCAAAGGAGTTCCCGTACTT
ATTCCACTGAAGGGAGGGAAGCATTTCAAGTCTAAAGAGAAAATTAAACTTGAAATATGT
TCTAGCTCCAATGGAAGGGTAGAGAATGATGACATGGATACCAGATCGCCGCTGGGAGAA
AACCTCAACATATCCAGGGACGGGAATTCTCAATCCTTTAGTACTACAAGTAAGAACTCA
GAGAGAAGTGACAATGCAAATGGTATTGTTGGGGAAACTGTCGGCATTCCAAAGTCAAAA
TCCCTTCAAAGTGTTAAAGATGACACTATATTAAGAACTGAAAGGGAAACAGAAGAACCT
TTCTTCAGACAGAAGTCAGGTTTAGGTGAGGGAATCCAGAAAGAAGTTCCAAAGAACTCT
GAAGAAATTATAAAGGATGAGTTGAAGCCTCTTCGTGCATTTTTAGTTAATGAGGCCGAG
GAAAAAGGCGGTGTTAAGATGGCACAAGAAACAGAAGGGAAGAGTAACACGGTCAAAGCT
AAGAAAGAAGCAGCACGATCAAAAAATAAAGTCAAGGAAAATGTGAAGAAAATTGATGCT
GAGGTTGACACAAATTTGAAGAAAGGTGATGTTGAGGCCAGTGACAACAAGCAAAAAAGC
GATTCACAAGCTAAGAGAAAAGGGAAGAGAGGTTTAGACAAAAAGCCTATAGTAGATACA
GGAGTTAACAGAGGTAGTCCGCAAGCTTCTCCGTTAAGATCAACCGAGAATTCTAGTAAA
GCTGGAATTAAAGGAAAGGTTCAAGACTTTGTAAAGATGTTCAACCACGAGGTTCATTCA
ACACCCCAAGAAGGTGAAAGTCGAAGTAAAAGCTTTAGATGGAAAGCTAGCAGCAATACT
GGAGTTGAAAGTGAAAAGAGTTTCAGCATGCCAAAAGCAAATGAGAAAGTTCAGTTGCCC
ACCGTTAACAAAACGCAAGATGCAACCCAAAATGTACACCAAAATGTTAACAAGCAGGAG
AAAACAACTAAATATTCCCAAACGAAAACACCAACTCCTAAGACTAAAGATTATTCAGAT
CAAAAGGCAGCTCCATCAACTAATGAGTCAAAACGAGATGACCGAAAAGCTTCAGTTGGA
AGCATGGATGATCTATTTGGTGGAAATTATGTGGTGGAAGAATTATTTGAAGATCAGGGC
AACGCTTCACAAACTAATAGCAAATCTGAGGACAACCAAGCTTCAGATGCCAAAATTAAG
CAATGGTCACAAGGGAGGAAAGGAAATATTCGCTCGTTGCTCTCAACCTTACAATTAGTT
TTATGGCCAGAGAGCGGATGGAAGCCTGTGGCGTTAATGGATTTAATTGAAGGAAGTGCA
GTGAAGAGAGCATATCAAAGAGCGTTACTCTATATACATCCGGATAAGCTCCAACAAAAG
GGTGCTGCTTCTCACCAGAAATACATTGCAGAAAAAGTTTTTGATATTCTTCAGGAAGCT
TGGGATCATTTCAACTCGCTTGGTCCTATGTAA

Peptide Sequence

PEP ID

XP_016468864.1
PEP Infomation

PREDICTED: J domain-containing protein required for chloroplast accumulation response 1-like [Nicotiana tabacum]
Sequence

MERISQKENVLFEYGPQRSFENSPSDMDMDFNDVFGGPPRRFSIQEGRKRHSFNDPMEYE
EDSAGSSRNSYEKPVFGAENANRRRNQGEDFYDDIFRVDESPRRSDRDPFGSNPGSRVLS
PVRPLSPKFEAFATSLPAQFSLPAKLTKATDLPLFASGSHSPQKKREKEMKNDAPTFYRQ
SPLSREGTSIGDELRYMSESDEQDIGGNLKKNGESKEASSTEYQFHFSIYKWAGKGVPVL
IPLKGGKHFKSKEKIKLEICSSSNGRVENDDMDTRSPLGENLNISRDGNSQSFSTTSKNS
ERSDNANGIVGETVGIPKSKSLQSVKDDTILRTERETEEPFFRQKSGLGEGIQKEVPKNS
EEIIKDELKPLRAFLVNEAEEKGGVKMAQETEGKSNTVKAKKEAARSKNKVKENVKKIDA
EVDTNLKKGDVEASDNKQKSDSQAKRKGKRGLDKKPIVDTGVNRGSPQASPLRSTENSSK
AGIKGKVQDFVKMFNHEVHSTPQEGESRSKSFRWKASSNTGVESEKSFSMPKANEKVQLP
TVNKTQDATQNVHQNVNKQEKTTKYSQTKTPTPKTKDYSDQKAAPSTNESKRDDRKASVG
SMDDLFGGNYVVEELFEDQGNASQTNSKSEDNQASDAKIKQWSQGRKGNIRSLLSTLQLV
LWPESGWKPVALMDLIEGSAVKRAYQRALLYIHPDKLQQKGAASHQKYIAEKVFDILQEA
WDHFNSLGPM

Transcript Sequence

Gene sequence data has not been registered.